selected publications
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academic article
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article
- A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples.
- Disruption of the Gut Microbiota With Antibiotics Exacerbates Acute Vascular Rejection.
- Efficacy of Bifidobacterium longum, B. infantis and Lactobacillus acidophilus probiotics to prevent gut dysbiosis in preterm infants of 28+0-32+6 weeks of gestation: a randomised, placebo-controlled, double-blind, multicentre trial: the PRIMAL Clinical Study protocol.
- Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities
- Force-induced polarized mitosis of endothelial and smooth muscle cells in arterial remodeling
- Gemma: A resource for the reuse, sharing and meta-analysis of expression profiling data
- Interactive Exploration, Analysis, and Visualization of Complex Phenome–Genome Datasets with ASPIREdb
- Microbiome Analysis Across a Natural Copper Gradient at a Proposed Northern Canadian Mine Site
- Pseudomonas Genome Database: Facilitating user-friendly, comprehensive comparisons of microbial genomes
- SLIMS-a user-friendly sample operations and inventory management system for genotyping labs
- Software Carpentry: R For Reproducible Scientific Analysis
- Spatiotemporal dynamics of river viruses, bacteria and microeukaryotes
- The Burkholderia Genome Database: Facilitating flexible queries and comparative analyses
- The Composition of Midgut Bacteria in Aedes aegypti (Diptera: Culicidae) That Are Naturally Susceptible or Refractory to Dengue Viruses
- Year-long metagenomic study of river microbiomes across land use and water quality
- metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes
- swcarpentry/r-novice-gapminder: Software Carpentry: R for Reproducible Scientific Analysis, June 2019