selected publications
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academic article
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article
- A Family of Interaction-Adjusted Indices of Community Similarity
- A faecal microbiota signature with high specificity for pancreatic cancer
- Alterations of oral microbiota and impact on the gut microbiome in type 1 diabetes mellitus revealed by multi-omic analysis
- Analyses of dryland biological soil crusts highlight lichens as an important regulator of microbial communities
- C. difficile is overdiagnosed in adults and a commensal in infants
- Combinatorial, additive and dose-dependent drug–microbiome associations
- Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
- Disentangling the mechanisms shaping the surface ocean microbiota
- Drivers and Determinants of Strain Dynamics Following Faecal Microbiota Transplantation
- Ecological Consistency of SSU rRNA-Based Operational Taxonomic Units at a Global Scale
- Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites
- Effects of oral antibiotics and isotretinoin on the murine gut microbiota
- Extensive transmission of microbes along the gastrointestinal tract
- Functional and evolutionary significance of unknown genes from uncultivated taxa
- GUNC: detection of chimerism and contamination in prokaryotic genomes
- Grasp Detection from Human ECoG during Natural Reach-to-Grasp Movements
- Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes
- Limits to robustness and reproducibility in the demarcation of operational taxonomic units
- MAPseq: improved speed, accuracy and consistency in ribosomal RNA sequence analysis
- Metagenomic Identification of Microbial Signatures Predicting Pancreatic Cancer From a Multinational Study
- Microbiome and metabolome features of the cardiometabolic disease spectrum
- Microbiota-Derived Hydrogen Fuels Salmonella Typhimurium Invasion of the Gut Ecosystem
- Preventive Trichuris suis ova (TSO) treatment protects immunocompetent rabbits from DSS colitis but may be detrimental under conditions of immunosuppression
- Protein tyrosine phosphatase non-receptor type 22 modulates colitis in a microbiota-dependent manner.
- Pseudo-transition Analysis Identifies the Key Regulators of Dynamic Metabolic Adaptations from Steady-State Data
- Similarity of the dog and human gut microbiomes in gene content and response to diet
- The Human Gut Microbiome: From Association to Modulation.
- Towards the biogeography of prokaryotic genes
- proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes
- treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses